Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015949634.1_cds_XP_016490443.1_80870
CDS Infomation

[gene=LOC107810203] [db_xref=GeneID:107810203] [protein=probable E3 ubiquitin-protein ligase ARI2] [protein_id=XP_016490443.1] [location=join(62917..63060,64971..65003,65089..65371,66016..66496,66779..67324,67440..67551)] [gbkey=CDS]
Sequence

ATGTCGGACTCTATGTATGGCAGCAGTGACGAGGAATACTATAATGGAGCGTACGATGAT
GATGAAAGCGACAATGAATATGATCGTGACCCTGAACCTGAATATGATAGTGACGTGTCC
TGTGGCAAAGCTCCTTCTTGCAGGGTAATAAGGAAAGAGTCCCTTTTAGCAGCACAGAAA
GAAGATTTGCAAAGAGTGGTGGACTTGCTTTCTCTTAAGGAACATCATGCTCGGACATTG
CTTATTCATTATCAATGGGATGTTGATAAGGTTTTTGCAGTGTTTGTTGAAAGAGGAAAA
GAAAAATTATACGCAGAAGCTGGCGTATCACTTGAAGAGAAAGATGATCAGCATCCTGCC
TCCGAGCCCTCAACAGAAATAACATGTGAAATCTGCTTTGAAGATTTCCCTGCTGAGGAA
ACGACGATAATGGATTGCAATCATAGGTTTTGCAATGATTGTTGGACGGAGTATTTCATA
GTAAAGATAAATGATGGGAAGAGTAGACGTATAACATGCATGGCTCAGAAGTGCAAAGCA
ATCTGTGATGAAGGAAAGATTAGGGATCTAGTCACTGCAAAGGATCCTAATTTGGCGGAG
AAATTTGATCGTTTTATCCTAGAATCATATATTGAGGATAATAAGAGGGTTAAATGGTGC
CCTAGTGTTCCTCATTGTGGAAATGCAATCCGCGTTGAGGATGACGAGTACTGTGAAGTT
GAATGTGCATGTGGTAAACAATTCTGTTTTAATTGCTTGTGTGAACTGCACTCACCTTGT
TCATGTGTGATGTGGGATCTTTGGCTTAAGAAGTGCGACGATGAAGCGCCAACCGTCACT
TGGATGTCCGAGAAAACCAAGCATTGTCCAAAATGTCATAAAATTGTCGAAAAGGATGGA
GGATGCAACCTTGTACAGTGTATATGTGGACAGCCATTTTGTTGGCTCTGTGGTGAAGCT
ACTGGACTTGAACACTCATGGTCAAGTATACAAGGCCACACTTGTGGCAGATACAAAGAA
AGCCATTTGAAAAGTGCTGATACCGTAGAGGATTATTGGCGCCTTACTCACTATTATCGT
CGATATAAGGCTCATATTGATTCATTGAAGATTGAAGCATCTGAATCTAAGCAAAAAATA
CTTAATAAAGTCCGTATCCTTGAATCAAAGGAATTGCAATTAAAAGATTTCAGTTGGGCA
ATGACTGGATTTGATAGACTTTCCCTATCAAGGCGAGCTGTCGCATGTTCCTATCCATTT
GCATACTACTATTTTGGTGATCTTTTCGCGAATGAAATCACAAAAGAGGAAAGGGAAATA
AAGCAAAACCTTTTTGAGGATCAGCAGCAGCAACTTGAAACAAATATTGAAAGACTTTCA
ATGTTTTTAGAAGAGCCGTTTGCTAATTATCCTGAAGATAAGCTTATGGAAACAAGAATG
AAGATCATTACTCTCTCCACAGTAACTGATGATCTCTGCACAAAGTTGTATGAGTGCATT
GACAACGATTTGCTGGTTCCTCTACAGCAAGCAACTCATACGATAGCTCGTTATAGATCC
AAGGGTGTGGAGAAAGCATCAGAACTACTTCCTAATTGA

Peptide Sequence

PEP ID

XP_016490443.1
PEP Infomation

PREDICTED: probable E3 ubiquitin-protein ligase ARI2 [Nicotiana tabacum]
Sequence

MSDSMYGSSDEEYYNGAYDDDESDNEYDRDPEPEYDSDVSCGKAPSCRVIRKESLLAAQK
EDLQRVVDLLSLKEHHARTLLIHYQWDVDKVFAVFVERGKEKLYAEAGVSLEEKDDQHPA
SEPSTEITCEICFEDFPAEETTIMDCNHRFCNDCWTEYFIVKINDGKSRRITCMAQKCKA
ICDEGKIRDLVTAKDPNLAEKFDRFILESYIEDNKRVKWCPSVPHCGNAIRVEDDEYCEV
ECACGKQFCFNCLCELHSPCSCVMWDLWLKKCDDEAPTVTWMSEKTKHCPKCHKIVEKDG
GCNLVQCICGQPFCWLCGEATGLEHSWSSIQGHTCGRYKESHLKSADTVEDYWRLTHYYR
RYKAHIDSLKIEASESKQKILNKVRILESKELQLKDFSWAMTGFDRLSLSRRAVACSYPF
AYYYFGDLFANEITKEEREIKQNLFEDQQQQLETNIERLSMFLEEPFANYPEDKLMETRM
KIITLSTVTDDLCTKLYECIDNDLLVPLQQATHTIARYRSKGVEKASELLPN

Transcript Sequence

Gene sequence data has not been registered.